Installation
1.
WARNING: Rtools is required to build R packages but is not currently installed.
For Windows, the RTools is required to build this package.
2.
sh: /opt/gfortran/bin/gfortran: No such file or directory
The GFortran compiler is required to build this package.
3.
dependency 'impute' is not available
There are dependent packages—impute, limma, and pcaMethods—that are available via Bioconductor rather than CRAN. If you get an error message about these packages, simply install them using:
install.packages("BiocManager")
BiocManager::install("impute")
BiocManager::install("limma")
BiocManager::install("pcaMethods")Original data
1. Can I use msDiaLogue to analyze data exported from Scaffold?
Please refer to Instructions for Exporting Data from Scaffold for Use in msDiaLogue Analysis.
Visualization
1. Can I customize the volcano plot generated by msDiaLogue?
Please refer to Customizing msDiaLogue Visualizations.