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Compiling data on a single protein from each step in the process

Source: R/pullProteinPath.R
pullProteinPath.Rd

Summarize the steps performed on the data for one protein.

Usage

pullProteinPath(listName = NULL, regexName = NULL, dataSetList, by = NULL)

Arguments

listName

A character vector identifying the proteins of interest.

regexName

A character vector specifying the proteins for regular expression pattern matching.

dataSetList

A list of data frames, the order dictates the order of presentation.

by

A character string (default = "PG.ProteinName" for Spectronaut, default = "AccessionNumber" for Scaffold) specifying the information to which listName and/or regexName are applied. Allowable options include:

  • For Spectronaut: "PG.Genes", "PG.ProteinAccession", "PG.ProteinDescriptions", and "PG.ProteinName".

  • For Scaffold: "ProteinDescriptions", "AccessionNumber", and "AlternateID".

Value

A 2d dataframe, with the protein data at each step present in the dataSetList.