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Summarize protein intensities across conditions

Source: R/summarize.R
summarize.Rd

Calculate the mean, standard deviation, and replicate count for protein across every condition.

Usage

summarize(dataSet, saveSumm = TRUE)

Arguments

dataSet

A data frame containing the data signals and labels.

saveSumm

A boolean (default = TRUE) specifying whether to save the summary statistics to current working directory.

Value

A 2d summarized data frame.

Details

The column 'Stat' in the generated data.frame includes the following statistics:

  • n: Number.

  • mean: Mean.

  • sd: Standard deviation.

  • median: Median.

  • trimmed: Trimmed mean with a trim of 0.1.

  • mad: Median absolute deviation (from the median).

  • min: Minimum.

  • max: Maximum.

  • range: The difference between the maximum and minimum value.

  • skew: Skewness.

  • kurtosis: Kurtosis.

  • se: Standard error.