Skip to contents

Heatmap

Source: R/visualizations.R
visualize.heatmap.Rd

Generate a heatmap for the data.

Usage

visualize.heatmap(
  dataSet,
  pkg = "pheatmap",
  cluster_cols = TRUE,
  cluster_rows = FALSE,
  show_colnames = TRUE,
  show_rownames = TRUE
)

Arguments

dataSet

The 2d data set of data.

pkg

A string (default = "pheatmap") specifying the source package used to plot the heatmap. Two options: "pheatmap" and "ggplot2".

cluster_cols

A boolean (default = TRUE) determining if rows should be clustered or hclust object. This argument only works when pkg = "pheatmap".

cluster_rows

A boolean (default = FALSE) determining if columns should be clustered or hclust object. This argument only works when pkg = "pheatmap".

show_colnames

A boolean (default = TRUE) specifying if column names are be shown. This argument only works when pkg = "pheatmap".

show_rownames

A boolean (default = TRUE) specifying if row names are be shown. This argument only works when pkg = "pheatmap".

Value

An object of class ggplot.