Generate a rank abundance distribution plot, also known as Whittaker plot, for the data.
Usage
visualize.rank(
dataSet,
listName = NULL,
regexName = NULL,
facet = c("Condition", "Replicate"),
color = "red"
)Arguments
- dataSet
The 2d data set of data.
- listName
A character vector of proteins to highlight.
- regexName
A character vector specifying proteins for regular expression pattern matching to highlight.
- facet
A character string (default = c("Replicate", "Condition")) specifying grouping variables for faceting. Allowed values are "Condition", "Replicate", c("Condition", "Replicate"), c("Replicate", "Condition"), or "none" for no grouping.
- color
A string (default = red") specifying the color used to highlight proteins.