Volcano plot

Generate a volcano plot for the data.

Usage

visualize.volcano(dataSet, P.thres = 0.05, F.thres = 1)

Arguments

dataSet

The data set corresponds to the output from the function analyze.mod_t, analyze.t, or analyze.wilcox.

P.thres

THe threshold value of p-value (default = 0.05) used to plot the horizontal line (-log10(P.thres)) on the volcano plot.

F.thres

The absolute threshold value of fold change (default = 1) used to plot the two vertical lines (-F.thres and F.thres) on the volcano plot.

Value

An object of class ggplot.